There are a couple of possible leak spots on the truck, my 2025 wasn't a windshield seal, it was the fresh air cowl intake, it might be worth having them recheck what they think is the leak source.
My local dealer has a 3rd party that does their leak testing, they did that today for me on my '25 and said they identified the fresh air intake water diverter part as being defective. I'm not sure I fully think this is correct, because even when the floor was all wet the cabin air filter was...
Brand new 2025 Lariat Hybrid, had it for 2 weeks, left it out of the garage because I wanted to clean the pollen off. Woke up with a large volume of water inside the passengers foot area from the rain, seems like the factory still hasn’t figured this out in 4 years….